Rogers was arrested and taken to Solano County Jail on child neglect charges.
Rogers, who works as a medical technician, said she homeschools the children.
Rogers claims the mess came from her tearing the house apart to look for her son in March.
Lt. Greg Hurlbut says an investigation revealed a lengthy period of "severe physical and emotional abuse".
The investigation began after police responded in March to a report of a missing 12-year-old.
She says police arrested a mother and a father after they say ten children were rescued from "horrible" living conditions.
California police reveal that 10 children have been found in a home in Fieldstone Court in Fairfield, Northern California, living in filthy and disgusting conditions amid feces and garbage.
Not only do I have 11 children and I'm 30 years old, but I also homeschool all of my children and people don't agree with that lifestyle and so I've had many people question my right to parent and I just feel like this whole situation was exploded. He has pleaded not guilty to seven counts of torture and nine counts of felony child abuse and was being held on $5.2 million bail.
Solano County Chief Deputy District Attorney Sharon Henry said she was "horrified" by the children's reports of "torture" carried out "for sadistic purposes". She declined to elaborate.
The children's accounts of their abuse led authorities to issue a warrant for Allen's arrest.
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The children described incidents of intentional abuse resulting in puncture wounds, burns, bruising and injuries consistent with being shot by a pellet or airsoft gun.
The police were made aware of the terrible conditions of the household after a 12-year-old boy was brought back to the house. "Once in a while we'd see a kid, but I didn't even know that they were theirs".
Reporters noted that during the tour, however, the house was still filthy, with scuffed walls and animal feces in the bathroom, according to the AP.
The mother accused of abusing her 10 children as they lived in squalor in Fairfield is keeping quiet on Tuesday. The home's other rooms were used as a master bedroom, playroom and meditation room. "I strive and I thrive on being a good parent to my children", said Ina Rogers, the accused mother. The oldest, a 14-year-old, did not live at home, according to KGO. She did not say why.
"That's why this is absolutely insane", Rogers said of the children's father. He said that it wasn't likely because his dog would have barked. "It went beyond somebody simply not cleaning the house for the day".
She is estranged from her son and he has kept his family away from the children, she said.
"We're in the process of making the decisions to file the appropriate charges", she said.
The boy slept under a Bush in the yard of a neighboring house. They were handed over to social services, and parents will be judged.
"It's a pretty big house", Magnaye said. So now you're telling me that there's torture and abuse?